PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509650g007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 408aa    MW: 44877.4 Da    PI: 7.1201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509650g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-1999145148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +lv++vkq+G + W+ Ia+++  gR++kqc++rw+++l
  PDK_30s65509650g007  99 KGQWTAEEDSILVRLVKQHGVRKWSQIAKKLV-GRSGKQCRERWHNHL 145
                          799*****************************.*************97 PP

2Myb_DNA-binding59.86.1e-19151193145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ WT+eE+ llv+a+k+ G++ W+ Ia++++ gR+++++k++w+
  PDK_30s65509650g007 151 KDTWTEEEERLLVEAHKKVGNR-WAEIAKHIP-GRSENSIKNHWN 193
                          679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.58794149IPR017930Myb domain
SuperFamilySSF466895.64E-3297192IPR009057Homeodomain-like
SMARTSM007171.2E-1898147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-29100152IPR009057Homeodomain-like
CDDcd001673.37E-17102145No hitNo description
PfamPF139217.3E-21102162No hitNo description
PROSITE profilePS5129422.309150200IPR017930Myb domain
SMARTSM007171.1E-18150198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21153198IPR009057Homeodomain-like
CDDcd001674.33E-15153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
METVSAGRID GLVEKNARSL RHAPPFTLLQ RFLASSCQGE LRLVKNPMDK LEQKAEIPFG  60
AIGVPTNGML LNDFSFYGDG NGVQSGSSAT VAAAATVVKG QWTAEEDSIL VRLVKQHGVR  120
KWSQIAKKLV GRSGKQCRER WHNHLRPDIK KDTWTEEEER LLVEAHKKVG NRWAEIAKHI  180
PGRSENSIKN HWNATKRRQN AKRKSKRKTA QGGRSRPSIL HEYVRSKMLD LKDNCATKIA  240
SSSAPSSPWH QHQITFPNVQ EPLSARDSSI STTTQMEDCM PFMEAFLDQS AAGSAEERGF  300
HAGDVQEPCM LDSLDVLDFD EGDYLIAGVD ECIEANGLTA AVSDGASTKS TACLFSDSYI  360
SYLLNGAPSS STDVFGSANA EILEDQTSSS SCKRELDLIE MIHGRTGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-45971992104C-Myb DNA-Binding Domain
1msf_C1e-45971992104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195206KRRQNAKRKSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785587.10.0PREDICTED: uncharacterized protein LOC103704173
TrEMBLM0REA41e-103M0REA4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P00770_0011e-103(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-71myb domain protein 119